Alphabetically sorted software

The list is not complete.

Only software where there are some caveats and/or howtos for users is included. The ultimate tool for searching is module avail command. See How to search for software page.

This page is under construction

A

• Abinit
• AByss
• AllineaDDT
• Alphafold
• Amber
• Ansys
• Augustus
• Autodock Vina

B

• BEAST
• Blast
• Busco
• BWA

C

• Canu
• Conda/Mamba modules
• CLCgenomicsWB
• CP2K
• Cplex
• Cuda
• CuDNN
• Cufflinks

D

• Debian-X
• Desmond
• Dirac

E

• Exonerate

F

• FMRIB library
• Freesurfer

G

• Galaxy
• Gamess
• Gaussian
• GCC
• Genome Analysis Toolkit
• GIbPSs
• GridMathematica
• Guppy

I

• Intel CDK
• InterPro Scan

J

• Java
• Julia
• Jupyter notebooks

K

• Kraken
• Kubernetes

L

• LAMMPS

M

• Maple
• Masurca
• Mathematica
• Matlab
• Medaka
• MEME
• Migrate
• Metabase
• Modeller
• Molden
• Molpro
• Mopac
• Mothur
• MrBayes

N

• NAMD
• Nextflow

O

• OpenCV
• OpenFoam
• OpenMS
• Orca

P

• Parallel
• PartitionFinder
• PAUP
• Perl
• PGI CDK
• Picard
• Platanus
• Python
• Python modules

Q

• QIIME
• Quantum Espresso

R

• R
• Repeat Explorer
• Repeat Masker
• Repeat Modeler
• RevBayes
• Rosetta
• RStudio

S

• SPAdes
• SRA toolkit
• STAR

T

• Tensorflow
• TEtools
• Tinker
• TmoleX
• TotalView
• Trimmomatic
• Turbomole

V

• VASP
• Velvet
• VMD

W

• Wien2k
• Wolfram Mathematica

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Last update: December 10, 2024